FastQCFastQC Report
Wed 31 May 2023
EGAF00007938610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55111.2169888194258887No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35050.7740057724710107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27560.6086048242311285No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23300.5145316547382183No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17550.38755495882642615No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15860.35023485168017776No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15730.34736407420738935No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14990.33102272551613265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14190.3133564026066659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13290.29348178933351593No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12110.2674239630420525No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11520.2543950498963208No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11050.24401608518700907No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10590.23385794951406572No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9990.22060820733196565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9580.21155421684086398No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8790.19410872296776557No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8350.18439224536755888No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8230.18174229693113886No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.16915504185814384No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7460.16473846113077714No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7340.16208851269435717No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6900.15237203509415048No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6890.15215120605778212No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6510.14375970267578542No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6380.1408889252029971No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6350.1402264380938921No Hit
AACTCTCCAACCGCTGAAGAGTGCGGTTACT6200.13691400254836708No Hit
AACTCTCCAACTGTTGAAGAATGTGGTTATA5420.11968933771163703No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5420.11968933771163703No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4970.109752031075062No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4910.108427056856852No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4750.10489379227495865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)