FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426174
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44401.0418279857522983No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43991.0322075021000812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26250.6159455996846358No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19630.46060998559273914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18160.4261170320103995No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16410.3850539920314238No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15460.3627626274714084No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15210.35689647890298326No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13500.3167720226949556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12870.3019893283025243No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9140.21446639166162176No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8100.19006321361697334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7510.1762191029954901No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6240.14641906826789058No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5920.13891039810030645No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5920.13891039810030645No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4790.112395406571025No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.10817177960175892No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA4360.1023056310333338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)