FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397324
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35050.8821515941649636No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31280.7872668149922984No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18810.47341716080579077No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16700.4203118865208243No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT14560.3664515609427067No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA12870.3239170047618568No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8910.2242502340659009No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8490.2136795159617843No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8140.20487058420835388No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8080.20336048162205153No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7950.20008859268506304No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7880.19832680633437696No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7290.18347746423573708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7160.18020557529874862No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7110.17894715647683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7080.1781921051836788No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6850.1724033786028531No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6380.1605742416768179No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6220.15654730144667828No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6140.15453383133160845No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.154030463802841No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5910.14874510475078273No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5800.14597658334256175No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5670.1427046944055733No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5620.14144627558365466No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG5300.13339239512337536No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5170.13012050618638693No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4920.12382841207679374No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4780.12030483937542157No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4680.11778800173158431No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4570.1150194803233633No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4450.11199927515075858No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT4410.11099254009322368No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4290.10797233492061895No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4280.10772065115623522No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4260.10721728362746777No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4190.10545549727678166No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4180.10520381351239794No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4040.10168024081102577No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3980.10017013822472338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)