FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401495
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17930.44658090387177923No Hit
CTGTGCGCGGTCGCCGCTACCCGGAGACACCAGACCGCCCGGCA14090.35093836785016No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13860.3452097784530318No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11960.29788664865066816No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG11750.2926561974619858No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8620.21469756784019728No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8230.20498387277550156No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7920.1972627305445896No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7800.194273901293914No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7740.1927794866685762No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7010.17459744206029965No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6970.17360116564340777No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6940.17285395833073885No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6780.1688688526631714No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6710.16712536893361063No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6030.1501886698464489No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5950.14819611701266516No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5680.14147125119864506No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5530.13773521463530056No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5320.13250476344661827No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5180.12901779598749671No Hit
TTGACCTTCGACCTGCGCAGTAACGCCTTTACCCTCGATAGCCT4770.1188059627143551No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4740.1180587554016862No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4520.11257923510878093No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT4470.1113338895876661No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4430.11033761317077423No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG4350.1083450603369905No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4250.10585436929476083No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4200.104609023773646No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4090.10186926362719337No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4080.1016201945229704No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4060.10112205631452446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)