FastQCFastQC Report
Wed 31 May 2023
EGAF00007938618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391522
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34110.8712154106282661No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21190.5412211829731152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10220.2610325856529135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8650.22093266789605692No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.17623530733905118No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6450.16474170033867827No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.14635192913808162No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5360.13690163004888614No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5300.1353691491155031No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4450.11365900255924316No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4440.11340358907034598No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG4170.10650742487012224No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4160.10625201138122506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)