FastQCFastQC Report
Wed 31 May 2023
EGAF00007938619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388002
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17700.45618321555043534No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13650.3518023102973696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13140.33865804815439093No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10590.2729367374394977No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10110.2605656671872825No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8900.22938026092649008No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8450.21778238256503832No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8260.21288550059020311No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7950.20489585105231417No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7340.1891742826067907No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7280.1876278988252638No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7120.18350420874119205No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6760.17422590605203064No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6150.15850433760650717No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5530.14252503853072923No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5280.13608177277436714No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5150.13273127458105885No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5090.13118489079953197No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5020.12938077638775058No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4790.12345297189189748No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4650.11984474306833469No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4260.10979324848840986No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG4070.10489636651357467No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA3950.10180359895052087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)