FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380670
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16340.42924317650458405No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15650.4111172406546353No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15530.40796490398507895No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14690.3858985472981848No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13190.34649433892873094No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11740.3084036041715922No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11630.3055139622244989No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10920.28686263692962405No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9970.26190663829563665No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9270.24351800772322482No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8280.21751123019938529No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8170.21462158825229202No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7710.2025376310189928No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7510.1972837365697323No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7310.1920298421204718No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7240.19019097906323063No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7060.18546247405889615No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6870.18047127433209867No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6800.1786324112748575No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6610.17364121154806No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6070.15945569653505662No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6020.1581422229227415No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT5870.1542018020857961No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5730.15052407597131373No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5580.14658365513436836No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5380.14132976068510783No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5020.13187275067643892No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4810.12635616150471538No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4740.12451729844747418No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4700.12346651955762208No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4680.12294113011269603No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG4540.11926340399821367No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4420.11611106732865738No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4310.11322142538156409No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4150.10901830982215567No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT3920.10297633120550607No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC3900.10245094176058002No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG3890.102188247038117No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC3860.10140016287072792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)