FastQCFastQC Report
Sun 21 May 2023
EGAF00007938625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414415
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16900.4078037715816271No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6900.16649976472859332No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5830.1406802359953187No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5620.13561285185140498No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5100.12306504349504724No Hit
TACCAGACCCAGGATGTGTTCGGACAGATAGCGCGGGTTATCGT4890.11799765935113353No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4810.11606722729630926No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4560.11003462712498341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)