FastQCFastQC Report
Wed 31 May 2023
EGAF00007938626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414415
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17240.4160081078146302No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12130.29270176031273No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7920.19111277342760277No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7070.1706019328450949No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.1491258762351749No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.14309327606384903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.13030416370063824No Hit
CGTGTTCACATGCTGATGCCAGGCTGGTACC5230.1262019955841367No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4570.11027593113183644No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.10955201911127734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)