FastQCFastQC Report
Wed 31 May 2023
EGAF00007938628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411495
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24670.5995212578524648No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10810.26270064034799934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10330.25103585705780146No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9640.2342677310781419No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8890.2160415071872076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8640.20996609922356285No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8540.20753593603810497No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7920.19246892428826595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7550.18347732050207172No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5790.1407064484380126No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5690.13827628525255473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5320.12928468146636046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5280.1283126161921773No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4970.12077911031725781No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4400.10692718016014775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)