FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413116
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25330.6131449762294368No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12740.30838795882996545No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12080.2924118165357914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10520.2546500256586528No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8020.1941343351504178No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7350.17791613009421084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7300.17670581628404614No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6850.16581299199256383No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6820.16508680370646503No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6550.15855110913157563No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6160.14911066141229098No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5880.14233290407536867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5130.12417819692289818No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4650.11255918434531706No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4380.10602348977042768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)