FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377358
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34300.9089511816365361No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31500.8347510851764108No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24690.6542858505716057No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19030.5042956555843523No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15550.41207553569819644No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15530.4115455350091955No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15430.408895531564191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14900.3948505133056673No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14190.37603548884613547No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10300.27295035483546126No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9160.24274031556241024No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7670.2032552642318435No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7500.1987502583753359No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7000.1855002411503135No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6900.18285023770530903No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6630.17569522840379692No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6600.1749002273702956No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6030.15979520773377007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5900.15635020325526422No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5490.14548518913074587No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5320.14098018327423828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5320.14098018327423828No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5310.1407151829297378No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5300.14045018258523737No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5000.13250017225022392No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4860.12879016742721766No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4400.11660015158019707No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4060.10759013986718181No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC3900.10335013435517465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)