FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387990
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT63921.6474651408541456No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC17800.4587747106884198No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17650.4549086316657646No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7740.19948967756900948No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7420.19124204232067837No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7260.1871182246965128No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6750.17397355601948505No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6630.17088069280136087No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6460.16649913657568494No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6280.16185984174849866No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5780.14897291167298127No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5520.14227170803371222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.13118894816876722No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4940.12732286914611202No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4730.1219103585143947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4690.12087940410835331No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4650.11984844970231191No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4470.11520915487512565No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4460.1149514162736153No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4380.11288950746153252No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4270.1100543828449187No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4180.10773473543132556No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4000.10309544060413928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)