FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402679
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54891.3631205004482478No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21600.5364074113624003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14570.3618266659051006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10480.260256929216572No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10250.2545451836326205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9530.2366649365872072No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9270.23020818070969679No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8450.20984456601908716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7760.19270932926723272No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7530.18699758368328123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7220.1792991439831727No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7200.17880247045413344No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6450.16017721311516123No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5860.14552534400850306No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.1326118322534823No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4720.11721495285326525No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4710.11696661608874563No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4700.116718279324226No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4550.11299322785643154No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4280.10628813521440154No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4170.10355643080468561No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4150.10305975727564637No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4050.10057638963045007No Hit

[OK]Adapter Content

Adapter graph