FastQCFastQC Report
Sun 21 May 2023
EGAF00007938638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432972
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48601.1224744325268148No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15010.3466736879059154No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12920.29840266807091453No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11610.26814666999251685No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9920.2291141228532099No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8010.18500041573127132No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7810.18038117938342432No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7760.17922637029646257No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.16837116487902218No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7290.16837116487902218No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6700.15474441765287364No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6540.15104902857459604No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5770.1332649686353852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5540.12795284683536118No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4980.11501898506138963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.11201648143528913No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4360.10069935238306404No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4340.10023742874827933No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4330.10000646693088698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)