FastQCFastQC Report
Wed 31 May 2023
EGAF00007938640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409822
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37130.9060030940261871No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15580.38016504726442213No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15240.3718687625359302No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10160.24791250835728681No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.21789947831009562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.21057922707907337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7620.1859343812679651No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7610.18569037289359772No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7320.17861413003694288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7030.17153788718028803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7000.1708058620571858No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG6450.15738540146697833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.1532372591027324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.13444861427644197No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC5320.1298124551634612No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.12883642166599157No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4680.11419591920394709No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT4600.11224385220900782No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4120.10053145023937221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)