FastQCFastQC Report
Sun 21 May 2023
EGAF00007938646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482347
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69311.4369323329470278No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26020.5394456687820179No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13060.2707594325247177No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10980.2276369501624349No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9990.20711230711500228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9330.19342921175004715No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8460.17539240422351543No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.16336786587249427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5040.10448909187783899No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4880.10117197784997108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)