FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482189
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12200.2530128227728132No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11140.2310297414499294No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA10570.2192086505498881No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9530.19764034434630404No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8900.1845749280883637No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8620.17876807641816797No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8490.17607203814271996No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7490.1553332821777353No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7090.1470377797917414No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6010.12463992334955795No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5330.11053756929336837No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5130.10638981810037143No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5040.10452333006352281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)