FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482189
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70831.4689260849998653No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24080.4993892436368312No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12720.26379697587460516No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10650.2208677510270869No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9460.19618863142875512No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8960.18581925344626277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8630.17897546397781783No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8590.17814591373921845No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7830.16238445920583008No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6110.12671379894605642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5720.1186256841197124No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5230.1084636936968699No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5180.10742675589862066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)