FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500401
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31990.639287291592143No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18360.3669057415952406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8340.16666633360045244No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8130.16246969930116048No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6650.132893419477579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6570.13129470164927728No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6320.12629870843583446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)