FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511118
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43400.8491189901353504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG41440.8107716809034313No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39880.7802503531474141No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30750.6016223259599545No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23920.46799369225893045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT23560.4609503089306187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23040.4507765330119463No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22700.44412444875742985No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG19140.3744732136219034No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG18890.36958197519946473No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC17760.347473577530042No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17460.3416040914231156No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG16960.3318216145782383No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16200.3169522497740248No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG14690.2874091697024953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14220.2782136414683107No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG13420.26256167851650697No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12010.23497509381395296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11310.22127962623112474No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11150.21814923364076397No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10970.21462754197660813No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10700.20934500448037438No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10420.20386681744724308No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10340.20230162115206274No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9220.18038887301953754No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9140.1788236767243572No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9050.17706283089227928No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8860.1733454896912259No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8670.16962814849017252No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8660.169432498953275No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8590.16806295219499215No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8480.16591080728911914No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8480.16591080728911914No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG8420.16473691006773386No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8370.16375866238324613No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8320.1627804146987584No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8260.16160651747737315No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG8220.16082391932978293No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7590.14849799850523754No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA7440.14556325545177434No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7120.1393024702710529No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6950.1359764281437946No Hit
CGCCCAGATCCGGCTCTGGCAGCGCTGACCA6910.13519382999620438No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6490.12697654944650746No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6160.12052011472888843No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6070.11875926889681052No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5830.11406368001126942No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5460.1068246471460602No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5370.1050638013139823No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5350.10467250224018719No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC5260.10291165640810929No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5240.1025203573343142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)