FastQCFastQC Report
Sun 21 May 2023
EGAF00007938662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471859
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66711.4137697913995495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42170.8936991770846799No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG37140.7870995360902303No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35970.7623039933539468No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22100.46836025168535517No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21200.4492867572728294No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG20370.43169675687016673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20260.42936555199752474No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG19020.40308651525137806No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG18150.3846488039859365No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16810.35625049008284254No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16780.35561470693575836No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15410.32658060988558024No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14900.3157722963851489No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG13790.2922483199430338No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG13700.29034097050178126No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11450.2426572344704668No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11020.23354434269559338No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10550.22358374005794104No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10310.21849747488126753No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC10170.21553048686154125No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10000.21192771569473084No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9680.20514602879249944No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9610.20366253478263635No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8440.1788669920463528No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8110.17187337742842673No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8070.1710256665656478No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7950.16848253397731103No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7930.16805867854592157No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7830.16593940138897426No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7710.16339626880063748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7710.16339626880063748No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7660.16233663022216382No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7630.16170084707507962No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7350.15576687103562717No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7240.15343566616298512No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7220.15301181073159567No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA6810.14432277438811172No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6680.1415677140840802No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6600.13987229235852236No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6590.13966036464282763No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6510.13796494291726977No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6260.1326667500249015No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6250.13245482230920677No Hit
CGCCCAGATCCGGCTCTGGCAGCGCTGACCA5810.12313000281863862No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5600.11867952078904927No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5220.11062626759264949No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5080.10765927957292326No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4880.10342072525902865No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC4880.10342072525902865No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4750.10066566495499714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)