FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441127
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG20240.45882478288565426No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19560.4434097210100492No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC19000.4307149641713157No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18670.4232341253199192No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16180.3667877958048362No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15710.35613326774375637No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13640.3092080058577235No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12960.2937929439821185No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG12640.28653879721712794No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11970.2713504274279289No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11170.25321506051545245No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11120.2520816000834227No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11060.25072144756498693No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10860.24618760583686783No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10030.22737216266517352No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9580.21717101877690553No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9410.21331725330800427No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8770.19880895977802313No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8210.1861142029392896No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7980.18090028495195262No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT7950.18022020869273475No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG7500.17001906480446674No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7400.1677521439404072No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7000.15868446048416895No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6850.15528407918807963No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG6840.15505738710167366No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6300.14281601443575206No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6170.13986901731247464No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6140.13918894105325677No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6120.13873555688044487No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6040.13692202018919722No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC5970.13533517558435554No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5610.1271742604737411No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT5430.12309380291843391No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5200.11787988493109694No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5110.11583965615344334No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5030.11402611946219568No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4810.10903889356126467No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4740.10745204895642299No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4490.1017847467962741No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4480.10155805470986813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)