FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441127
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29250.6630743527374203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28850.6540066692811821No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21730.4926019037601416No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG20450.46358531670017933No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT20380.4619984720953377No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG20340.4610917037497138No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19120.43343526920818726No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG18620.42210066488788944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16150.3661077195456184No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG14580.33051706197988334No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13990.317142228881932No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13040.29560648067336615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12350.27996472671135525No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12240.27747111376088973No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12170.275884269156048No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11890.2695368907366813No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9890.22419847345549015No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9860.22351839719627228No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9380.21263717704878643No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8970.2033428015061422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8220.18634089502569556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8170.1852074345936658No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC8080.18316720581601215No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7930.17976682451992285No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7860.17817997991508114No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7810.17704651948305136No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7520.17047244897727865No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7430.16843222019962506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.1682055281132191No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7280.1650318389035357No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6960.15777769213854514No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6310.14304270652215803No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6290.1425893223493461No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6280.14236263026294016No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6210.14077578565809848No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA6060.13737540436200912No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5910.1339750230659198No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC5830.13216148637467215No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5650.12808102881936492No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5160.11697311658547313No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5150.11674642449906716No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5060.11470619572141356No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4960.112439274857354No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4680.10609189643798725No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4470.10133136262346218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)