FastQCFastQC Report
Sun 21 May 2023
EGAF00007938666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483645
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32350.6688790331751595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27670.572113843831736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19720.40773707988297203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17380.35935448521126034No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10890.22516515212604288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9220.19063569353554777No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8080.16706468587497028No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5840.12074972345418643No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.12074972345418643No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5800.1199226705538153No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5520.11413330025121732No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4960.10255455964602135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)