FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483680
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18510.3826910353953027No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18270.37772907707575254No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14900.30805491233873633No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14820.30640092623221965No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14440.2985444922262653No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12500.2584353291432352No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9760.20178630499503805No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9480.19599735362222956No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG9470.195790605358915No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9390.19413661925239828No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9120.1885544161429044No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8330.17222130334105193No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7950.16436486933509759No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7910.16353787628183922No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7900.16333112801852465No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7580.1567151835924578No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC7500.15506119748594113No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7280.15051273569302018No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6940.14348329474032417No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6930.1432765464770096No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6820.14100231558054913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6230.1288041680449884No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6130.12673668541184252No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5790.11970724445914654No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5450.11267780350645056No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5060.10461462123718161No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT4990.10316738339397949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)