FastQCFastQC Report
Sun 21 May 2023
EGAF00007938668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483680
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33080.6839232550446576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28820.595848494872643No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23930.4947485941118095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19120.3953026794574926No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15710.324801521667218No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15660.3237677803506451No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15140.3130168706582865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13750.2842788620575587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12310.254507112140258No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG10390.2148114455838571No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10330.21357095600396955No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9940.2055077737347006No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9020.18648693350975853No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8670.17925074429374793No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8490.17552927555408535No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8040.16622560370492886No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7740.16002315580549123No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7520.15547469401257027No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC7390.15278696658948066No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6960.14389679126695337No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6760.1397618260006616No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6160.1273569302017863No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA6100.12611644062189878No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5700.11784651008931524No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5320.10999007608336091No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5040.10420112471055243No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4890.10109990076083361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)