FastQCFastQC Report
Sun 21 May 2023
EGAF00007938669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499735
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7610.15228070877565109No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6710.1342711637167699No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6240.1248661790749097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6110.12226480034418241No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5290.10585610373497953No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5080.10165387655457392No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)