FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499735
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG73341.4675778162426085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15830.31676788698009944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8900.17809439002671415No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6400.12806787597426636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5590.11185928542127327No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5560.1112589672526439No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5130.10265440683562288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)