FastQCFastQC Report
Sun 21 May 2023
EGAF00007938672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495501
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30170.6088786904567297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19200.387486604466994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19080.3850648131890753No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16450.3319872210146902No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15880.3204837124445763No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13880.28012052447926444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11720.2365282814767276No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11570.2335010423793292No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11210.22623566854557303No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10450.21089765711875455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10250.2068613383222234No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9970.20121049200707972No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8330.16811267787552395No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8140.16427817501881933No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7620.15378374614783824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7570.15277466644870547No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7530.1519674026893992No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6760.13642757532275415No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6330.1277494899102121No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6100.12310772329420122No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6020.12149319577558874No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5690.11483326976131228No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5460.11019150314530142No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5420.10938423938599519No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5020.1013116017929328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)