FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499322
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18020.3608893659802692No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12740.2551459779460949No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10690.2140903064555537No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10330.20688052999867818No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8660.17343517810150563No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7290.14599797325172936No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6700.13418195072518335No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6310.12637135956356818No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6200.12416837231285624No Hit
ACGCACTGCGCGGGTACGTACAGACGGTTTGGAAGTACCCTGAG6170.12356755760811662No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5780.11575696644650145No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5740.11495588017351528No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5240.10494230176118817No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.10454175862469509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)