FastQCFastQC Report
Wed 31 May 2023
EGAF00007938676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499322
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29110.5829905351656847No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26100.5227087931234754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18430.3691005002783775No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10490.2100848750906229No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9400.18825527415174978No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7830.15681263793704264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.1478004173659482No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.144395800705757No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6830.1367854811123884No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6810.13638493797589532No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6650.13318059288395062No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6570.1315784203379783No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6300.12617108799532165No Hit
ATGCAAGATCAGACCGTTCCGCAGGAAGCAA6230.12476918701759586No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5750.11515615174176183No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5510.11034963410384482No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5070.10153768510099695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)