FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523183
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23690.45280523258592115No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21070.4027271528318007No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20920.3998600871970228No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18950.3622059585269399No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18770.3587654797652064No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18210.34806176806203565No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17830.3407985351205983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17040.3256986561107681No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16420.3138481181536862No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15650.2991305145618264No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14790.2826926715890998No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14650.2800167436633071No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13190.252110638151469No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT11810.2257336343115124No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11510.21999950304195665No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11490.21961722762398628No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11470.21923495220601585No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10310.19706297796373354No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10060.19228453523910372No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT9010.1722150757956585No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8790.16801004619798426No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8400.16055567554756175No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8100.15482154427800598No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT7380.1410596292310721No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7240.1383837013052794No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7070.13513436025253114No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6960.13303184545369404No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG6870.1313116060728273No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6830.13054705523688653No Hit
GGTGAATTTGCTCGGGTCCATAGAAAAGGACTGGCCCGCGCTAG6360.12156358291458248No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6010.11487376310010072No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5970.11410921226415996No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5880.11238897288329322No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5710.10913963183054497No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5640.10780166786764861No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5440.10397891368794476No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5330.10187639888910764No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC5330.10187639888910764No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5290.10111184805316686No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5270.10072957263519647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)