FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450764
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63011.3978489852783276No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39950.8862730830323629No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28220.6260482203547755No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17600.3904482168052462No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15180.33676158699452485No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13180.29239247144847413No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10400.23071940083946368No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG10320.22894463621762162No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG9400.2085348430664383No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8920.19788625533538615No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7880.17481431525143978No Hit
TATGACCGTTCCCGTCGTATTGATCTGCCGG7750.1719303227409465No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7710.17104294043002546No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7680.1703774036968347No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7410.16438757309811786No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7200.15972881596578253No Hit
ACCGGCTTTCCACCTCAGCCGGGTATGGCCC6980.15484821325571696No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.13909717723686896No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6260.1388753316591387No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5970.13244180990496135No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.12955781739446806No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.12756120719489578No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5670.12578644257305374No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5100.11314124464242929No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4960.11003540655420574No Hit
TTTCCGCCTCAGCCGGGTATGGCACCGCGCC4650.1031581936445679No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4590.10182712017818636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)