FastQCFastQC Report
Wed 31 May 2023
EGAF00007938684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467489
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66391.420140366939115No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60211.287944743084864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28280.6049340198379No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA25730.5503872818397866No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC20470.43787126542014887No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC19900.4256784651617471No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC15380.32899169820038543No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15230.3257830665534376No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14180.3033226450248027No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14150.30268091869541314No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13540.2896324833311586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13440.2874933955665267No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13360.28578212535482117No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13160.2815039498255574No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA12260.2622521599438703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12260.2622521599438703No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9220.19722389189906075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9100.19465698658150246No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9040.1933735339227233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8580.1835337302054166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8070.17262438260579394No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7590.16235676133556082No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG7530.16107330867678168No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7390.15807858580629705No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7330.15679513314751792No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG7230.15465604538288602No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7050.1508056874065486No Hit
TTCTCCCAGGTTGCTGACGTAGTCCGTGCAC6940.1484526908654535No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6470.1383989783716836No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6230.13326516773656708No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6170.13198171507778794No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.1302704448660824No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5500.11764982705475423No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5250.1123021076431745No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5160.11037692865500578No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4880.10438748291403649No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4690.10032321616123589No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4690.10032321616123589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)