FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences566308
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46710.8248161777689879No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32910.5811325285886831No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26100.4608799451888372No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20850.3681742090876343No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20480.36164066197193045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19450.34345267946064684No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17220.30407481441194545No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15950.28164885539317824No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG15210.2685817611617706No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13750.2428007374079123No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA13180.23273554320263884No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11600.20483553119503872No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11360.2005975546875552No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10310.1820564074673146No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10000.17658235447848167No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9340.16492791908290189No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9340.16492791908290189No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA9340.16492791908290189No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9230.1629855131836386No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9010.15910070138511198No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8710.15380323075075752No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8590.15168424249701576No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8510.15027158366118792No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8270.14603360715370434No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7910.139676642392479No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7870.13897031297456508No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7830.13826398355665115No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7440.13137727173199037No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA7300.12890511876929162No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7210.1273158775789853No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7160.12643296580659288No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6930.1223715716535878No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6730.11883992456401818No Hit
ATGAACGCACCGGATGATCTGGTCCTGTTCG6720.1186633422095397No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6550.11566144218340549No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6410.11318928922070676No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6250.11036397154905103No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6190.10930447742218015No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6090.10753865387739533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)