FastQCFastQC Report
Wed 31 May 2023
EGAF00007938688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546650
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37440.6848989298454221No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33940.6208725875788896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17850.3265343455593158No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16230.29689929571023504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14110.25811762553736395No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13180.2411049117351139No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11350.20762828135004116No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10220.18695691941827494No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10120.18512759535351686No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9970.18238360925637978No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9790.17909082593981523No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8280.15146803256196836No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7520.137565169669807No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7520.137565169669807No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6870.12567456324887954No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6850.12530869843592793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6530.1194548614287021No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6510.11908899661575048No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6440.11780846977041982No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6340.11597914570566177No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5980.10939357907253269No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5490.10042989115521814No Hit

[OK]Adapter Content

Adapter graph