FastQCFastQC Report
Wed 31 May 2023
EGAF00007938690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518057
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31610.6101645185761413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21190.4090283501622409No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13640.26329149109074873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12930.24958643546945605No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12780.24669100118326748No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9840.1899404891739712No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8990.17353302821890257No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8150.15731859621624647No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7180.13859478783222695No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.1283642533543606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5760.11118467658964167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5760.11118467658964167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5750.1109916476372291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5300.10230534477866336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)