FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464257
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11910.25653894287000517No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11400.24555364808715863No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10930.2354299450519863No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9780.21065918230635186No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG9670.2082898050002477No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9530.20527423388338786No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8870.1910579700467629No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8640.186103817497636No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6370.13720848581712286No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6000.1292387621511361No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5860.12622319103427626No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5590.12040744673747514No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5500.11846886530520812No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5490.11825346736828955No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5100.10985294782846569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)