FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464257
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63821.3746696334142512No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12010.25869292223919077No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11980.2580467284284351No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11890.2561081469961681No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11770.2535233717531454No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10240.22056748740460563No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT10100.21755191628774578No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9450.2035510503880394No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9430.20312025451420224No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9120.1964429184697269No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6970.15013236203223645No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6000.1292387621511361No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5990.12902336421421756No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5880.12665398690811341No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5680.12234602816974219No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.11911505911596379No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5180.11157613132381419No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4830.10403720353166458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)