FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489613
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31490.6431610271786083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20160.4117537728777626No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12920.2638818822212645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.2332454407869072No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10660.21772297712683283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6800.1388852011690866No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6330.12928578285298797No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5970.12193303690874222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)