FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471472
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29420.6240031221366275No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27050.573735025621882No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22520.4776529677266095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13160.27912580174432416No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12590.2670360063800183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11180.23712967047884076No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11130.23606916211355075No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10460.22185835001866497No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10110.21443479146163505No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9850.20892014796212713No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9750.20679913123154717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8820.1870736756371534No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8770.18601316727186343No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6200.1315030372959582No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5880.12471578375810229No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5660.12004954695082634No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5560.11792853022024638No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5430.1151712084704924No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5310.11262598839379646No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5270.11177758170156447No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5040.10689924322123054No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4970.10541453150982455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)