FastQCFastQC Report
Wed 31 May 2023
EGAF00007938703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451429
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14780.3274047524638426No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14290.316550332388925No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13360.29594908612428533No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12740.2822149219478589No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11120.2463288800675189No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10670.2363605351007578No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8680.1922782984699698No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7600.16835427054974314No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7190.1592720006911386No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5630.12471507147303341No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4860.10765812564101995No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4780.10588597542470687No Hit
CTGACGGTTGATTTCATCTTTGGTGCGGACGTTGTCGGCGTGTG4730.10477838153951119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)