FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546619
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9940.18184512430047256No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9540.1745274130610169No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9360.17123444300326188No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8010.1465371675700991No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6820.12476697663271859No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6770.12385226272778663No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6110.11177803918268484No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.10976566859183454No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5890.10775329800098424No Hit
TGCCAGTTCTTTACGACAACCGCCGTCGTGACGTTTGTCCACGG5820.10647269853407951No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5570.10189912900941972No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5470.10006970119955583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)