FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546619
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20590.37667918605097883No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13720.2509974955133283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12700.23233733185271643No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10600.19391934784557435No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9640.17635684087088083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7360.1346458868059837No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7050.12897466059540558No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.11543689480241265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6230.11397335255452151No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6140.11232686752564401No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC6110.11177803918268484No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5950.10885095468690259No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5790.10592387019112033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)