FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489984
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT26950.5500179597701149No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17870.3647057863113898No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT12790.2610289315569488No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7920.16163793103448276No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG7240.14775992685475445No Hit
AACGTGAGGACGCGGAGTGGACGGGGTCTGCGGCAGCTGACGAC6770.13816777690700105No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6230.12714700888192268No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAGAAG6100.12449386102403343No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5400.11020768025078369No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5300.1081667972831766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)