FastQCFastQC Report
Wed 31 May 2023
EGAF00007938708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489984
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG27330.5577733150470219No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18240.372257053291536No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13320.27184561128526646No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11570.2361301593521421No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8050.164291078892372No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7770.1585766065830721No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6790.13857595350052246No Hit
CGTTGGAGCCGTTCTCCGTCTGAAGGTCGCG6680.13633098223615464No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG6140.1253102142110763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.11918756530825496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11490171107628004No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5100.10408503134796239No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4950.10102370689655173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)