FastQCFastQC Report
Sun 21 May 2023
EGAF00007938709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550753
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27550.5002242384517197No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26130.47444135574386337No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24340.4419403979642417No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19810.3596893707342493No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16270.29541373356114264No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15050.2732622427839703No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14160.25710254869242655No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12420.2255094388954758No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12220.22187804696479183No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11790.21407055431382124No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11630.21116544076927407No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT10980.1993634169945511No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT10910.19809242981881167No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10230.18574569725448611No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10090.18320372290300735No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9590.17412524307629737No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9130.16577304163572418No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9060.16450205445998478No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG8930.1621416497050402No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8510.1545157266506038No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT8420.152881600281796No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC8380.15215532189565922No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8350.1516106131060566No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7700.13980858933133364No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7700.13980858933133364No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7620.13835603255906007No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7240.13145638789076047No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7010.12728028717047388No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6750.12255947766058468No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6680.12128849048484529No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6660.1209253512917769No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6530.1185649465368323No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6210.1127547194477379No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6030.10948646671012233No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5960.10821547953438293No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT5800.10531036598983574No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5750.10440251800716474No Hit
CACCAGCGGAACCAGGGACAGCTGCAGACGCGGAGGACCGGTTT5610.10186054365568593No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5580.10131583486608334No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5560.10095269567301494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)