FastQCFastQC Report
Wed 31 May 2023
EGAF00007938712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499703
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48990.9803823471141858No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34010.6806042789416914No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18610.37242121820361296No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14730.2947750964072659No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7840.1568931945575672No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7700.15409153036903922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7320.1464870132858918No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7280.14568653780345525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7230.14468594345040955No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6890.13788190184969873No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6790.1358807131436073No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6700.13407964330812502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6650.13307904895507933No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6470.12947690928411476No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6100.1220725110715765No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.1200713223654851No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5910.11827025253000281No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5780.11566870721208397No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5710.11426787511781998No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5290.10586288255223604No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5050.10106002965761661No Hit

[OK]Adapter Content

Adapter graph