FastQCFastQC Report
Wed 31 May 2023
EGAF00007938714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480851
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49731.0342081018860312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33440.6954337206327947No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19440.4042832395066247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14460.3007168540774585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12650.2630752561604322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11150.23188056175405689No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9690.20151772586518485No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8830.18363276773886297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8450.17573011182258122No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7920.16470798646566193No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7880.16387612794815856No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7450.15493364888499764No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.15202214407373593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.12373895447862228No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.11999559114985724No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.11458851078608549No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5320.11063718282794462No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5130.10668585486980375No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4850.10086284524728036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)